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The Center for Agroforestry

Current Technical Publications

Updated January 2019



Anderson, S.H. and R.P. Udawatta. 2019. Agroforestry: A System for Improving Soil Health. In: M.R. Mosquera-Losada and R. Prabhu (eds.) Agroforestry for Sustainable Agriculture. Burleigh Dodds Science Publishing, Cambridge, UK. In Press

Gold, M. 2019. Agroforestry for the Cultivation of Nuts. In: M.R. Mosquera-Losada and R. Prabhu (eds.) Agroforestry for Sustainable Agriculture. Burleigh Dodds Science Publishing, Cambridge, UK. In Press

Jose, S., Gold, M.A., Garrett, H.E. 2018. Temperate Agroforestry in the United States: Current Trends and Future Directions. Chapter 3. In: Temperate Agroforestry Systems 2nd Edition. A.M. Gordon (Editor), S.M. Newman (Editor), B. Coleman (Editor). CABI. (H ISBN 9781780644851)

Van Sambeek, J. 2019. Agroforestry for Hardwood/Timber. In M.R. Mosquera-Losada and R. Prabhu (eds.) Agroforestry for Sustainable Agriculture. Burleigh Dodds Science Publishing, Cambridge, UK. In Press


Alagele, S.M., S.H. Anderson, and R.P. Udawatta. 2018. Biomass and buffer management practice effects on soil hydraulic properties compared to grain crops for claypan landscapes. Agroforestry Systems.

Aguilar, F. X., Obeng, E. A., and Cai, Z. 2018. Water quality improvements elicit consistent willingness-to-pay for the enhancement of forested watershed ecosystem services. Ecosystem Services, 30:158-171.

Body, M.J.A., M.S. Zinkgraf, T.G. Whitham, C-H. Lin, R.A. Richardson, H.M. Appel, and J.C. Schultz. 2018. Heritable phytohormone profiles of poplar genotypes vary in resistance to a galling aphid. Molecular Plant-Microbe Interactions.

Byers, P.L., A.L. Thomas, and E. Nichols. 2019. Blackberries: A model for integrating research with outreach and education to farmers and the public. Acta Horticulturae. (in press).

Cai, Z., Gold, M., and Brannan, R. 2018. An exploratory analysis of US consumer preferences for North American pawpaw. In Press. Agroforestry Systems. DOI: 10.1007/s10457-018-0296-5

Cercioglu, M., S.H. Anderson, R.P. Udawatta, and S.I. Haruna. 2018. Effects of cover crop and biofuel crop management on computed tomography-measured pore parameters. Geoderma. 319:80-88.

Dai, J., D.C. Vu, S. Nagel, C-H. Lin and M. Fidalgo. 2018. Colloidal crystal templated molecular imprinted polymer for the detection of 2-butoxyethanol in water contaminated by hydraulic fracturing. Microchimica Acta 185:32 doi: 10.1007/ s00604-017-2590-8

Davis, A.N., G. Carlo, Z. Gulseven, F. Palermo, C-H. Lin, S.C. Nagel, D.C. Vu, P.H. Vo, T.L. Ho, and J.A. McElroy. 2018. Exposure to environmental toxicants and young children's cognitive and social development. Reviews on Environmental Health (In Press)

Kadhem, A., Xiang, S., Nagel, S., Lin, C.H., and Fidalgo. M.M. 2018. Photonic molecular imprinted polymer film for the detection of testosterone in aqueous samples. Polymers

Kassotis, C.D., D.C. Vu, P.H. Vo, C-H. Lin, J.N. Cornelius-Green, S. Patton and S.C. Nagel. 2018. Endocrine disrupting activities and organic contaminants associated with oil and gas operations in Wyoming groundwater. Archives of Environmental Contamination and Toxicology 75:247-258

Hemmelgarn, H.L, M.A. Gold, A.L. Ball and H.E. Stelzer. 2018. Agroforestry education for high school agriculture science: An evaluation of novel content adoption following educator professional development programs. Agroforestry Systems. 018-0278-7

Ho, K-V., Z. Lei , L.W. Sumner , M.V. Coggeshall, H-Y. Hsieh, G.C. Stewart and C-H. Lin. 2018. Identifying antibacterial compounds in black walnuts (Juglans nigra) using a metabolomics approach. Metabolites 8, 58, doi: 10.3390/metabo8040058.

Lei, Z., C. Kranawetter, B. Sumner, D. Huhman, D.J. Wherritt, A.L. Thomas, C. Rohla, and L.W. Sumner. 2018. Metabolomics of two pecan varieties provides insights into scab resistance. Metabolites 8(4):56. doi: 10.3390/ metabo8040056.

Ma, B., Cai, Z., Zheng, J., and Wen Y. 2019. Conservation, ecotourism, poverty, and income inequality: A case study of the nature reserves in Qinling, China. World Development. 115:236-244.

McGowan, K.G., P.L. Byers, S. Jose, M. Gold, and A.L. Thomas. 2019. Flower production and effect of flower harvest on berry yields within six American elderberry genotypes. Acta Horticulturae. (in press).

Senaviratne, G.M.M.A., C. Baffaut, J.A. Lory, R.P. Udawatta, N.O. Nelson, J.R. Williams, and S.H. Anderson. 2018. Improved APEX model simulation of buffer water quality benefits at field scale. Trans American Society of Agricultural and Biological Engineers 61:603-616.

Senaviratne, G.M.M.M.A., C. Baffaut, J.A. Lory, R.P. Udawatta, N.O. Nelson, and A.B. Bhandari. 2018. Evaluation of four parameterization strategies for the APEX model. American Society of Agricultural and Biological Engineers. 61:1603-1617. doi:10.13031/trans.12656

Serra-Clusellas, A., L. De Angelis, C.H.Lin, P. Vo, M. Bayat, L. Sumner, Z. Lei, N. Braga, L.R. Pizzio, J.D. Stripeikis, J,A. Rengifo-Herrera and M.M. Fidalgo. 2018. Abatement of 2,4-D Herbicide from water by hydrogen peroxide solar photolysis and solar photo-Fenton-like process with Fe(III) Water Research 144:572-580 doi: 10.1007/s00604-0172590-8

Taleghani, A.H., T.T. Lim and C-H. Lin. 2018. Degradation of veterinary antibiotics in swine manure via anaerobic digestion. American Society of Agricultural and Biological Engineers (ASABE) Annual International Meeting. 1801460. (doi:10.13031/aim.201801460)

VeVerka, J.S., R.P. Udawatta, and R.J. Kremer. 2018. Soil health indicator responses on Missouri claypan soils affected by landscape position, depth, and management practices. Journal of Soil Water Conservation. In Press

Vu, D.C., T.L. Ho, P.H. Vo, G. Carlo, J.A. McElroy, A.N. Davis, S.C. Nagel and C-H. Lin. 2018. Determination of volatile organic compounds in child care centers by thermal desorption gas chromatography-mass spectrometry Analytical Method 10: 730-742, DOI: 10.1039/C7AY02570J

Vu, D.C., P.H. Vo, M.V. Coggeshall and C-H. Lin. 2018. Identification and characterization of phenolic compounds in black walnut kernels. Journal of Agricultural Food and Chemistry. 66 (17):4503-4511, DOI:10.1021/acs.jafc.8b01181

Weerasekara, CS, NR Kitchen, S Jose, PP Motavalli, S Bardhan, RB Mitchell. 2018. Yield of lignocellulosic warm-season grasses affected by nitrogen and harvest management. Agronomy Journal. 110(3), 890-899

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PUBLICATIONS 2016 & 2017


Dosskey, M.G., J. Brandle, G. Bentrup [chapter leads], A.C. Bell, S. Brantly, A. Chambers, C. Elevitch, M. Gold, J. Griffin, K. Havens, S. Jose, T. Sauer, R. Udawatta, and D. Zamora [contributors - alphabetical order]. 2017. Chapter 2. Reducing threats and enhancing resiliency. Pp 7-42.

Schoeneberger, G. Bentrup, T. PatelWeynand (eds) Agroforestry: Enhancing Resiliency in U.S. Agricultural Landscapes Under Changing Conditions. Gen. Tech. Rep. WO-96. Washington, DC: U.S. Department of Agriculture, Forest Service, Washington Office.

Udawatta et al., 2016. Agroforestry and climate change: reducing threats and enhancing resiliency in agricultural landscapes. Haan, T., Patel-Weynand, T., Schoeneberger, M., Bentrup, G. (Eds.). USDA Forest Service. 63p.

Udawatta, R.P., C.J. Gantzer, and S. Jose. 2017. Agroforestry practices and soil ecosystem services. Pp 305-334. In M.M. AlKaisi and B. Lowery (Eds.) Soil Health and Intensification of Agroecosytems. Elsevier AP, USA.


Aguilar, F.X., Cai, Z., and Butler, B. 2017. Geographic proximity and peer-effects on land management preferences: Evidence from family forest owners. PLOS ONE. 12 (1): e0169667. doi:10.1371/journal.pone.0169667.

Akdemir, E., Anderson, S.H., Udawatta, R P. 2016. Influence of agroforestry buffers on soil hydraulic properties relative to row crop management. Soil Science. 181:368-376 DOI: 10.1097/ SS.0000000000000170

Baffaut, C., N.O. Nelson, J.A. Lory, G.M.M.M.A. Senaviratne, A. B. Bhandari, R.P. Udawatta, D. W. Sweeney, M.J. Helmers, M. Van Liew, A.P. Mallarino, and C.S. Wortmann. 2017. Multisite evaluation of APEX for water quality: 1. Best professional judgement parameterization. Journal of Environmental Quality. doi:10.2134/jeq2016.06.0226

Bardhan, S., Chattopadhyay, A. K., Jose, S., Chandrasoma, J. 2017. Impact of Boron Additions in Marginal Soils for Growth of Corn, Wheat, Soybean, and Switchgrass. Int. J. of Current Agricultural Science. 7(1): 155-159.

Bobryk, C.W., Rega, C. C., Bardhan, S., Farina, A., He, H. S., Jose, S. 2016. A Rapid Soundscape Analysis to Quantify Conservation Benefits of Temperate Agroforestry Systems Using Low-Cost Technology. Agroforest. Syst. 90: 997-1008.

Brownstein, Korey, Andrew L. Thomas, George E. Rottinghaus, Briana A. Lynch, David R. Gang, and William R.

Cai, Z., Xie, Y., and Aguilar, F.X. 2017. Eco-label credibility and retailer effects on green product purchasing intention. Forest Policy and Economics. 80: 200-208. 2017.04.001

Brownstein, Korey, Andrew L. Thomas, George E. Rottinghaus, Briana A. Lynch, David R. Gang, and William R. Folk. 2016. Harpagide and Related Iridoid Glycosides in Vegetative Tissues of Cultivated Scrophularia marilandica and Scrophularia lanceolata. Acta Horticulturae 1125:83-90

Cai, Z., Narine, L.L., D'Amato, A. and Aguilar, F.X., 2016. Attitudinal and revenue effects on non-industrial private forest owners' willingness-to-harvest timber and woody biomass. Forest Policy and Economics. 63:52-61.

Chandrasoma, J.M., R.P. Udawatta, S.H. Anderson, A.L. Thompson, and M.A. Abney. 2017. Soil hydraulic properties as influenced by prairie restoration. Geoderma 283:48-56. DOI:10.1016/j.geoderma.2016.08.001

Hefty, A. R., Coggeshall, M. V., Aukema, B. H., Venette, R. C., Seybold, S.J. 2016. Reproduction of walnut twig beetle in varieties of walnut and butternut. HortTechnology 26:(6): 727-734.

Johnson, M.C., Matheus Dela Libera Tres, A.L. Thomas, G.E. Rottinghaus, and C. M. Greenlief. 2017. Discriminant Analyses of the Polyphenol Content of American Elderberry Juice from Multiple Environments Provide Genotype Fingerprint. Journal of Agricultural and Food Chemistry 65:4044-405

Lane, T., Best, T., Zembower, N., Davitt, J., Henry, N., Xu, Y., Koch, J., Liang, H., McGraw, J., Schuster, S., Shim, D., Coggeshall, M., Carlson, J.E., Staton, M. The green ash transcriptome and identification of genes responding to abiotic and biotic stresses. 2016. BMC Genomics. 17:702 DOI: 10.1186/s12864-016-3052-0 URL:

Luo, R., G. Rottinghaus, A.L. Thomas, D. Monroe, K. Tran, and R.E. Smith. 2016. Identification of Unknown Compound in Apocynum cannabinum by High Resolution Mass Spectrometry (HRMS) and 600 MHz NMR. Journal of Regulatory Science 3:14-19.

Nash, P.R, K.A. Nelson, P.P. Motavalli, and R.P. Udawatta. 2017. Improved water management of a poorly drained floodplain soil and the impact on forage production and nitrate concentration. Journal of Soil Water Conservation 72:640-649.

Nelson, N.O, C. Baffaut, J.A. Lory, G.M.M.M.A. Senaviratne, A.B. Bhandari, R.P. Udawatta, D.W. Sweeney, M.J. Helmers, M.W. Van Liew, A.P. Mallarino, and C.S. Wortmann. 2017. Multisite evaluation of APEX for water quality: II Regional parameterization. Journal of Environmental Quality. doi:10.2134/ jeq2016.07.0254

Nordenholt, R.M., Goyne, K.W., Kremer, R.J., Lin, C.H., Lerch, R.D., Veum, K.S. 2016. Veterinary Antibiotic Effects on Atrazine Degradation and Soil Microorganisms. Journal of Environmental Quality. 45(2):565-75. doi: 10.2134/jeq2015.05.0235.

Odom, T., Williams, K., Best, T., Zembower, N., Shumaker, K., Coggeshall, M.V., Schlarbaum, S.E., Carlson, J. E. 2016. An Analysis of Gene Expression Induced by Elevated Atmospheric Ozone in Hardwood Trees Native to Eastern North America. Journal of Undergraduate Research and Scholarly Excellence - Volume VII.

Pang, K., Van Sambeek, J.W., Navarrete-Tindall, N.E., Lin, C.-H., Jose, S., Garrett, H.E. 2017. Responses of legumes and grasses to non-, moderate, and dense shade in Missouri, USA. I. Forage yield and its species-level plasticity. Agroforestry Systems 91: doi: 10.1007/s10457-017-0067-8 .

Pang, K., Van Sambeek, J.W., Navarrete-Tindall, N.E., Lin, C.-H., Jose, S., Garrett, H.E. 2017. Responses of legumes and grasses to non-, moderate, and dense shade in Missouri, USA. II. Forage quality and its species-level plasticity. Agroforestry Systems 91: DOI 10.1007/s10457-017-0068-7

Rajper, A.M., Udawatta, R. P., Kremer, R. J., Lin, C-H., Jose, S. 2016. Assessing the role of probiotics on soil microbial biomass, communities structure and enzyme activity. Agroforestry Systems DOI 10.1007/s10457-016-9895-1

Sahin, H., Anderson, S. H., Udawatta, R. P. 2016. Water infiltration and soil water content in claypan soils influenced by agroforestry and grass buffers compared to row crop management. Agroforestry Systems DOI 10.1007/s10457-016-9899-x

Shen, Q., Wall, J., and Hu, Z. Q. 2016. Solids retention time-dependent photophototrophic growth and population changes between algal and cyanobacterial species under chemostat conditions. Water Environment Research, 88, 5-12.

Svoma, B.M., Fox, N. I., Pallardy, S., Udawatta, R. P. 2016. Evapotranspiration differences between agroforestry and grass buffer systems. Agricultural Water Management. 176:214-221. DOI: 10.1016/j.agwat.2016.06.018

Tang, T. and Hu, Z. 2016. A comparison of algal productivity and nutrient removal capacity between algal CSTR and algal MBR at the same light level under practical and optimal conditions. Ecological Engineering 93, 66-72.

Thomas, Andrew L. and Jordan T. Prindle. 2016. Grafting Mature Unproductive Black Walnut Trees to Improved Cultivars Demonstrates Horticultural and Economic Feasibility in Missouri, USA. Acta Horticulturae 1109:101-106.

Udawatta, R.P., Gantzer, C. J., Reinbott, T. M., Wright, R. L., Pierce II, R. A. 2016. Yield differences influenced by distance from riparian buffers and CRP. Agronomy Journal 108:647-655. DOI:10.2134/ agronj2015.0273

Udawatta, R.P., Gantzer, C. J., Anderson, S. H., Assouline, S. 2016. Synchrotron microtomographic quantification of geometrical soil pore characteristics affected by compaction. SOIL 2:211-220. DOI:10.5194/soil-2-211-2016

Van Sambeek, J., Godsey, L., Walter, D., Garrett, E. H., Dwyer. 2016. Field performance of Quercus bicolor established as repeatedly air-root-pruned container and bareroot planting stock. Open Journal of Forestry 6(3): 163-176. DOI: 10.4236/ ojf.2016.63014.

Warmund, M., M. Kwasniewski, J. Elmore, A. Thomas, and K. Adhikari. 2016. Sensory Attributes of Juice from North American-Grown Elderberry Cultivars. HortScience 51(12):1561-1565.

Weerasekara, C. S., Udawatta, R. P., Jose, S., Kremer, R. J., Weerasekara, C. 2016. Soil quality differences in a row-crop watershed with agroforestry and grass buffers. Agroforestry Systems 90(5): 829-838. DOI: 10.1007/s10457-016-9903-5

Xu, M., Xu, S., Bernards, M., and Hu, Z. Q. 2016. Evaluation of high density algal cultivation for secondary wastewater polishing. Water Environ. Res., 88, 47-53.

Zamora, D., Udawatta, R. P., 2016. Agroforestry as a catalyst for on-farm conservation and diversification. Agroforestry Systems DOI 10.1007/s10457-016-0013-1

Zhang, Yu-zhu, Wen-Xian Du, Yuting Fan, Jiang Yi, Shu-Chen Lyu, Kari C. Nadeau, Andrew L. Thomas, and Tara McHugh. 2017. Purification and Characterization of a Black Walnut (Juglans nigra) Allergen, Jug n 4. Journal of Agricultural and Food Chemistry 65:454-462.

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PUBLICATIONS 2014 & 2015


Bardhan, S., Jose, S. and Godsey, L. 2015. Cellulosic Biofuel in the United States: Targets, Achievements, Bottle- necks and Case Study of Three Advanced Biofuel Facilities. In. Jose, S. and Bhaskar T. (eds.). Biomass and Biofuels. CRC Press Boca Raton, FL.

Jose, S., and Gold, M.A. 2014. Agroforestry. In: Achieving Sustainability: Visions, Principles, and Practices, 1st Edition. Debra Rowe (ed). Detroit: Macmillan Reference USA.

Jose, S., and Bhaskar, T. (eds.). 2015. Biomass and Biofuels: Advanced Biorefineries for Sustainable Production and Distribution. CRC Press Boca Raton, FL. 372p.

Rao, P.S., Prakasham R.S., Parthasarathy, P.R., Chopra, S. and Jose, S. 2015. Sorghum as a sustainable feedstock for biofuels. In. Jose, S. and Bhaskar T. (eds.). Biomass and Biofuels. CRC Press Boca Raton, FL

Williams, C.L. 2015. Biomass feedstocks: types, sources, availability, production and sustainability. In. Jose, S. and Bhaskar T. (eds.). Biomass and Biofuels. CRC Press Boca Raton, FL


Blank, PJ, C.L. Williams, D.W. Sample, T.D. Meehan and M.G. Turner. 2015. Alternative scenarios of bioenergy crop production in an agricultural landscape and implications for bird communities. Ecological Applications. 46(1):42-54. http://

Bunyan, M., Bardhan, S., Aditya, S., and Jose, S. 2015. Effect of topography on the distribution of tropical montane forest fragments: A predictive modeling approach. Journal of Tropical Forest Science 27: 30-38.

Byers, P.L., Thomas, A.L. and Nathan, M. 2015. Effect of genotype, environment, growth stage, and foliage type on American elderberry leaf elemental status. Acta Horticulturae 1061:183-189.

Cernusca, M.M. and Gold, M.A. 2015. Breaking down market barriers for elderberry growers and producers. Acta Horticulturae 1061:269-277.

Dai, J., Zhang, C., Lin, C.H., Hu, Z. 2015. Emission of carbon dioxide and methane from duckweed ponds for stormwater treatment. Water Environment Research. 2015: 87:805-812.

Donoghue, D.J., Mays, A.R., Hale, M., O'Gorman, M., Gekara, O., Goodwin, H.L., Arsi, K., Spencer, T., Jose, S., Burke, J.M., Donoghue, A.M. 2014. Armed to Farm: Developing training programs for military veterans in agriculture. Journal of Rural Social Sciences 29:82-93.

Hu, W., Yin, J., Deng, B., and Hu, Z.Q. 2015. Application of nano TiO2 modified hollow fiber membranes in algal membrane bioreactors for high-density algae cultivation and wastewater polishing. Bioresource Technology 193: 135-141.

Islam K.K., Jose S., Masakazu T., Kimihiko H., Krott M. and Sato N. 2015. Does actor power impede outcomes in participatory agroforestry approach? Evidence from Sal forests area, Bangladesh. Agroforestry Systems 89:885-899.

Jiang, J.M., Zong, Y., Chuang, D.Y., Lei, W., Lu, C.H., Gu, Z., Fritsche, K.L., Thomas, A.L., Lubahn, D.B., Simonyi, A. and Sun, G.Y. 2015. Effects of elderberry juice from different genotypes on oxidative and inflammatory responses in microglial cells. Acta Horticulturae 1061:281- 288.

Kassotis, C.D., Klemp, K.C., Vu, D.C., Lin, C.H., Meng, C.X., Besch-Williford, C.L, Pinatti, L., Zoeller, R.T., Drobnis, E.Z., Balise, V.D., Isiguzo, C.J., Williams, M.A., Tillitt, D.E. and Nagel, S.C. 2015. Endocrine disrupting activity of hydraulic fracturing chemicals and adverse health outcomes following prenatal exposure in male mice. Endocrinology doi: 10.1210/en.2015

Kassotis, C.D., Tillitt, D.E., Lin, C.H., McElroy, J.A., Nagel, S.C. 2015. Endocrine-disrupting chemicals and oil and natural gas operations: potential environmental contamination and recommendations to assess complex environmental mixtures. Environmental Health Perspectives. DOI:10.1289/ehp.1409535

Keller, K.E., Mosier, N.J., Thomas, A.L., Quito-Avila, D.F. and Martin, R.R. 2015. Identification of two new carlaviruses in elderberry. Acta Horticulturae 1061:161- 164.

Khodwekar, S., Staton, M., Coggeshall, M.V. Carlson, J.E., Gailing, O. 2015. Nuclear microsatellite markers for population genetic studies in sugar maple (Acer saccharum Marsh.). Ann. For. Res. 58(2) DOI:10.15287/afr.2015.360, 12 pp.

Kutsokon, N., Jose, S., Holzmueller. E. 2015. A global analysis of temperature effects on Populus plantation production potential. American Journal of Plant Sciences 6:23-33.

Le, T.H., Lin C.H., Smeda, R.J., Leigh, N.D., Wycoff, W.G., Fritschi, F.B. 2014. Isolation and identification of an allelopathic phenylethylamine in rice. Phytochemistry 108:109-21.

Mihail, J.D. 2015. Is it time for morels yet? McIlvainea 23:53-60. http:// mcilvainea/v23/time_for_morels.html.

Perkins-Veazie, P., Thomas, A.L., Byers, P.L. and Finn, C.E. 2015. Fruit composition of elderberry (Sambucus spp.) geno- types grown in Oregon and Missouri, USA. Acta Horticulturae 1061:219-224.

Senaviratne, G.M.M.M.A., Udawatta, R.P., Baffaut, C. and Anderson, S.H. 2014. Evaluation of a stepwise, multi- objective, multivariable parameter optimization method for the APEX model. J. Environ. Qual. 43:1381-1391. doi:10.2134/jeq2013.12.0509

Senaviratne, G.M.M.M.A., Udawatta, R.P., Anderson, S.H., Baffaut, C., and Thompson, A. 2014. Use of Fuzzy rainfall runoff predictions for claypan watersheds with conservation buffers J. Hydrology. 507:1008-1018.

Sharma, A., Bohn, K., Jose, S., Cropper, W. 2014. Converting even-aged stands to uneven-aged stands: A simulation analysis of silvicultural regimes. Forest Science 60:893-906

Shen, Q., Wall, J., and Hu, Z.Q. 2015. Solids retention time-dependent phototrophic growth and population changes between algal and cyanobacterial species under chemostat conditions. Water Environment Research DOI: http:// 5526103

Staton, M., Best, T., Khodwekar, S., Owusu, S., Xu, T., Xu, Y., Jennings, J. Cronn, R. Arumuganathan, A.K., Coggeshall, M.V., Gailing, O., Liang, H., Romero-Severson, J., Schlarbaum, S., Carlson, J.E. 2015. Preliminary genomic characterization of ten hardwood tree species from multiplexed low coverage whole genome sequencing. PLoS ONE 10(12): e0145031. doi:10.1371/journal.pone.0145031

Tang, T., Fadaei, H., and Hu, Z.Q. 2014. Rapid evaluation of algal and cyanobacterial activities through specific oxygen production rate measurement. Ecological Engineering 73:439-445.

Thomas, A.L., Byers, P.L., Gu, S., Avery, Jr., J.D., Kaps, M., Datta, A., Fernando, L., Grossi, P. and Rottinghaus, G.E. 2015. Occurrence of polyphenols, organic acids, and sugars among diverse elderberry genotypes grown in three Missouri (USA) Locations. Acta Horticulturae 1061:147-154.

Thomas, A.L., Byers, P.L., Avery, Jr., J.D., Kaps, M., Gu, S., Johnson, H.Y. and Millican, M. 2015. 'MARGE': A European elderberry for North American producers. Acta Horticulturae 1061:191-199.

Thomas, A.L., Byers, P.L., Avery, Jr., J.D., Kaps, M. and Gu, S. 2015. Horticultural performance of eight American elderberry genotypes at three Missouri loca- tions. Acta Horticulturae 1061:237-244.

Thomas AL, JD Avery Jr, PL Byers, S Easter, K Hunt. 2015. Ozark chinkapin demonstrates compatibility as a scion grafted to Chinese chestnut rootstocks: implications for ex situ conservation. Native Plants Journal 16(2): 117-123.

Thi, H., Lin, C.H., Smeda, R., Fritschi, F. 2014. Isolation and purification of growth-inhibitors from Vietnamese rice cultivars. Weed Biology and Management. 14:221-231.

Udawatta, R.P., Nelson, K., Jose, S., and Motavalli, P. 2014. Temporal and spatial yield differences in a silver maple alley cropping system. Agronomy Journal 106: 407-415.

Udawatta, R.P, Kremer, R., Nelson, K., Jose, S., Bardhan, S. 2014. Soil quality indicators of a mature alley cropping agroforestry system in temperate North America. Communications in Soil Science and Plant Analysis 45: 2539-2551.

Warmund, M.R. and Amrine, Jr., J.W. 2015. Eriophyid mites inhabiting American elderberry. Acta Horticulturae 1061:155-159.

Willett, C.D., Lerch, R.N., Goyne, K.W., Leigh, N.D., Lin, C.H., Roberts, C.A. 2014 A simple method for isolation and purification of DIBOA-Glc from Tripsacum dactyloides. Natural Product Communications. 9(9):1283-6.

Wu, H., Johnson, M.C., Lu, C.- .H., Fritsche, K.L., Thomas, A.L., Cai, Z. and Greenlief, C.M. 2015. Determination of anthocyanins and total polyphenols in a variety of elderberry juices by UPLC-MS/MS and other methods. Acta Horticulturae 1061:43-51.

Xu, M., Bernards, M., and Hu, Z. 2014. Algae-facilitated chemical phosphorus removal during high-density Chlorella Emersonii cultivation in a membrane bioreactor. Bioresource Technology 153: 383-387.

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PUBLICATIONS 2012 & 2013


Holzmueller E., and Jose, S. 2013. Invasion success: Exploring the mechanisms. In Jose, S., Singh, H., Kohli, R., and Batish, D. (eds.) Invasive Plant Ecology. CRC Press, Boca Raton, FL.

Hagan, D. and Jose, S. 2013. Mycorrhizae and invasive alien plants. In Jose, S., Singh, H., Kohli, R., and Batish, D. (eds.) Invasive Plant Ecology. CRC Press, Boca Raton, FL.

Jose, S., Singh, H., Kohli, R., and Batish, D. (eds.) 2013. Invasive Plant Ecology. CRC Press, Boca Raton, FL 282p.

Jose, S. 2013. The longleaf pine landscape: A fresh perspective. Foreword In Latham, D. Painting the Landscape With Fire. University of South Carolina Press.

Jose, S., Kohli, R., Batish, D. Singh. Bardhan S. 2013. Invasive plant ecology: The horse behind the cart? In Jose, S., Singh, H., Kohli, R., and Batish, D. (eds.), Invasive Plant Ecology. CRC Press, Boca Raton, FL.

Jose, S. and Gold, M.A. 2012. Agroforestry. In Rowe, D. (Ed.) Achieving Sustainability: Visions, Principles, and Practices. Macmillan Reference, MI, USA

Jose, S., Gold, M.A., and Garrett, H.E. 2012. The future of temperate agroforestry in the United States. In Garrity D. and Nair, P.K.R. (eds.). Agroforestry: The Way Forward, Springer Science, The Netherlands


Bardhan, S., Jose, S. Udawatta, R. Fritschi, F. 2013. Microbial community diversity in a 21-year-old temperate alley cropping system. Agroforestry Systems 87:1031-1041

Bardhan, S., and Jose, S. 2012. The potential for floodplains to sustain biomass feedstock production systems. Biofuels 3:575-588.

Bardhan, S., Jose, S., Jenkins, M.A., Webster, C., Udawatta, R. and Stehn, S. 2012. Microbial community diversity and composition across a gradient of soil acidity in spruce-fir forests of the southern Appalachian Mountains. Applied Soil Ecology 61:60-68

Bardhan, S., Jose, S., Biswas, S. and Kabir K. 2012. Homegarden agroforests as intermediary for biodiversity conservation in Bangladesh. Agroforestry Systems 85:29-34

Bunyan, M., Bardhan, S. and Jose, S. 2012. The montane temperate forest-grassland mosaic of the Western Ghats. American Journal of Plant Sciences 3:1632-1639

Bunyan, M., Jose, S., and Fletcher, R. 2012. Edge effects in small forest fragments: Why more is better? American Journal of Plant Sciences 3:869-878

Cai, Z.; and Aguilar, F.X. 2013. Consumer stated purchasing preferences and corporate social responsibility in the wood products industry: a conjoint analysis in the U.S. and China. Ecological Economics, 95:118-127.

Cai, Z.; and Aguilar, F.X. 2013. Meta-analysis of consumer's willingness-to-pay estimates for certified wood products. Journal of Forest Economics. 19:15-31.

Cernusca, M.M., F.X. Aguilar and M.A. Gold. 2012. Post-purchase evaluation of U.S. consumers' preferences for chestnuts. Agroforestry Systems 86(3):355-364.

Cernusca, M.M., M.A. Gold and L.D. Godsey. 2012. Using the Porter Model to Analyze the U.S. Elderberry Industry. Agroforestry Systems 86(3):365-377.

Chu, B., S.H. Anderson, K.W. Goyne, C.-H. Lin, and R.N. Lerch. 2013. Sulfamethazine Transport in Agroforestry and Cropland Soils. Vadose Zone Journal, doi:10.2136/vzj2012.0124

Chu, B., K.W. Goyne, S.H. Anderson, C.-H. Lin, and R.N. Lerch. 2013. Sulfamethazine sorption to soil: vegetative management, pH, and dissolved organic matter effects. Journal of Environmental Quality. 42(3):794-805.

Fletcher, E.H., Thetford, M., Sharma, J., Jose, S. 2012. Effect of root competition and shade on survival and growth of nine woody plant taxa within a Pecan (Carya illinoinensis K. Koch.) alley cropping system. Agroforestry Systems 86:49-60.

Gold, M.A., and Jose, S. 2012. Developing an online certificate and masters degree program in agroforestry. Agroforestry Systems 86:379-385

Gold, M.A. and S. Jose. 2012. An interdisciplinary online certificate and master's degree program in agroforestry. Agroforestry Systems 86(3):379-385.

Hagan, D., Jose, S., Bohn, K., and Escobedo, F. 2013. Cogongrass (Imperata cylindrica) invasion and eradication: implications for soil nutrient dynamics in a longleaf pine sandhill ecosystem. Invasive Plant Science and Management 6:433-443.

Hagan, D., Jose, S., and Lin C.H. 2013. Novel rhizosphere chemistry of cogongrass: implications for the performance of native pine savanna species in the Southeastern US. Journal of Chemical Ecology 39:312-322.

Hagan, D.L., S. Jose, C.-H. Lin. 2013. Allelopathic root exudates of cogongrass (Imperata cylindrica): potential implications for the performance of native pine savanna plant species in the southeastern U.S. Journal of Chemical Ecology. 39:312-22.

Henderson D. and Jose, S. 2013. Nutrient use efficiency of three fast growing hardwood species across a resource gradient. Open Journal of Forestry 2:187-199

Holzmueller E. and Jose, S. 2012. Response of Imperata cylindrica, an invasive grass, to disturbance in the southeastern forests, USA. Forests 3: 853-863.

Holzmueller E.J. and Jose, S. 2012. Bioenergy crops in agroforestry systems: Potential for the U.S. North Central Region. Agroforestry Systems 85:305-314

Houx III, J.H., R.L. McGraw, H.E. Garrett, R.L. Kallenbach, F.B. Fritschi and M.A. Gold. 2012. Temperate Silvopasture Tree Establishment and Growth as Influenced by Forage Species and Cultural Management Practices. J. of Agric. Sci. 4(7):20-30

Ikem, A., B. Broz, J. Garth, S. Tesfaye, C.-H. Lin. 2013. Evaluation of surface water quality impacted by sewage overflows from animal and residential lagoon systems using principal component analysis. J of Environmental Analytical Toxicology. 3:1-8.

Jose, S. 2012. Agroforestry for conserving and enhancing biodiversity. Agroforestry Systems 85:1-8

Jose, S., and Bardhan, S. 2012. Agroforestry for biomass production and carbon sequestration. Agroforestry Systems 86: 105-112

Keesey, I.W., B.A. Barrett, C.-H. Lin, R. Lerch. 2012. Electroantennographic responses of the small chestnut weevil curculio sayi (Coleoptera: Curculionidae) to volatile organic compounds identified from chestnut reproductive plant tissue. Environmental Entomology, 41:731-1042

Khoobchandani, M., K. Katti, A. Zambre, C.-H. Lin, K. Katti. 2013. Green nanotechnology derived from broccoli phytochemical-based gold nanoparticles: implications in nanomedicine. International Journal of Green Nanotechnology. 1:1-15

Kukrety, S., Jose, S. and Alavalapati, J.R.R. 2013. Exploring stakeholders' perceptions with Analytic Hierarchy Process - A Case study of Red Sanders (Pterocarpus santalinus L.) restoration in India. Restoration Ecology 21: 777-784.

Kukrety, S., Dwivedi, P., Jose, S. and Alavalapati, J.R.R. 2013. Stakeholders' perceptions on developing sustainable Red Sanders (Pterocarpus santalinus L.) wood trade in Andhra Pradesh, India. Forest Policy and Economics 26:43-53.

Kukrety, S., Gezan, S., Jose, S. and Alavalapati, J.R.R. 2013. Facilitating establishment of advance regeneration of Pterocarpus santalinus L.-An endangered tree species from India. Restoration Ecology 21:372-379

Mason, A., Blanche, C., Crowe, T., Gold, M., Jacobson, M., Jose, S., Josiah, S., Norland, E., Onokpise, K., Wight, B. 2012. Advancing agroforestry through certification of agroforesters: Should the Society of American Foresters have a role? Journal of Forestry 110:466-467

McCaskill, G., and Jose, S. 2012. The ecological classification of coastal wet longleaf pine (Pinus palustris) of Florida from reference conditions. American Journal of Plant Sciences 3: 1205-1218

Morgan, M. and Jose, S. 2013. Increasing seed germination of Bursera graveolens, a promising tree for the restoration of tropical dry forests. Tree Planters' Notes 56:74-83

Motavalli, P., Nelson, K., Udawatta, R., Jose, S. and Bardhan, S. 2013. Global achievements on sustainable land management. International Soil and Water Conservation Research Journal 1:1-10

Ramsey, C., Jose, S. and Zamora D. 2012. Cogongrass (Imperata cylindrica) control with imazapyr and glyphosate combined with and without four adjuvants. Southern Journal of Applied Forestry 36:204-210

Senaviratne, A., Udawatta, R., Nelson, K., K. Shannon, Jose, S. 2012. Temporal and spatial influence of perennial upland buffers on corn and soybean yields. Agronomy Journal 104:1356-1362.

Sharma, A., Jose, S., Bohn, K. and Andreu, M. 2012. Effects of reproduction methods and overstory species composition on understory light availability in longleaf pine - slash pine ecosystems. Forest Ecology and Management 284:23-33

Stehn, S., Jenkins, M.A., Webster C., Jose, S. 2013. Regeneration responses to exogenous disturbance gradients in southern Appalachian Picea-Abies forests. Forest Ecology and Management 289:98-105

Tamang, B., Andreu, M.G., Staudhammer, C.L., Rockwood, D.L., and Jose, S. 2012. Equations for estimating aboveground biomass of cadaghi (Corymbia torelliana) trees in farm windbreaks. Agroforestry Systems 86:255-266.

Udawatta, R. and Jose, S. 2012. Agroforestry strategies to sequester carbon in temperate North America. Agroforestry Systems 86:225-242.

Valdivia, C., C. Barbieri and M.A. Gold. 2012. Between forestry and farming: Policy and environmental implications of the barriers to agroforestry adoption. Canadian J. of Ag. Economics 60(2):155-175.

Willett, C.D., R.N. Lerch, C.-H. Lin, K.W. Goyne, N.D. Leigh, C.A. Rober. 2013. Identification of an atrazine-degrading benzoxazinoid in eastern gamagrass (Tripsacum dactyloides). Journal of Agricultural and Food Chemistry. 61(34):8026-33.

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